Well I should have read the instruction all the way through before starting this, but really who does that? I used ODIN updated to the injected root rom, but then I let the OTA install which removed root.
Back at square one, and this was last night at midnight, so I had to wait till I got home from work and re-run ODIN to install the injected root rom. 15 minutes later I am back and running, and this time I make sure not to install the OTA.
So lesson learned here, read the instructions before following through with an install. Next up is taking it from here to CM10 with Google Apps.